fix: deep audit PR C — workflow-skill boundaries + wiki matches the shipped API#38
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…ipped API Workflow skills (phase-C review): start-new-project mixed dataset/ and data/ for the project data tree — steps 3 and 5 now say data/ like the scaffold tree, .gitignore, manifests and the Publish gate (with the assistant-clone dataset/ distinction noted); contribute-upstream hardcoded a stale model name in the co-author trailer (AGENTS.md says name the current session's model); doubled-article mangles in _style.md/_bootstrap_skill.md frontmatter and titles. init-slam's 11 workspace source paths all verified present; _bootstrap_skill otherwise sound. Wiki (verified against installed 2026.7 autofit): UltraNest and PySwarms are not exposed as public search classes but four pages still recommended them — the families lists, both pick-a-search tables and the index now name what ships (Nautilus/Dynesty, BFGS/LBFGS), with not-exposed notes matching the ones searches.md already carried. searches.md shared-knobs listed two stale kwargs (iterations_per_update, force_pickle_overwrite) — replaced with the verified shared set. samples_and_posteriors no longer names the removed SamplesMLE. sandbox.md env vars spot-checked — all real. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This was referenced Jul 8, 2026
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Part of #35 (deep audit, phase C of C — do not auto-close). Workflow-skill review + wiki spot-checks.
Workflow skills
start-new-project.md(highest-stakes — it scaffolds user repos) reviewed end-to-end. One real contradiction fixed: steps 3/5 said project datasets live underdataset/<sample>/…while the scaffold tree,.gitignore, run manifests and the Publish gate (which auditsgit ls-files data/) all usedata/— aligned todata/, with the assistant-clonedataset/distinction noted. Lifecycle, copy/never-copy lists, refer-back contract, manifest schema and publish checklist all verified sound.contribute-upstream.md— the co-author trailer hardcoded "Claude Opus 4.7"; now instructs naming the current session's model per AGENTS.md.init-slam.md— all 11autolens_workspacesource paths verified present; no changes._bootstrap_skill.md/_style.md— doubled-article mangles in frontmatter/titles fixed ("a the workspace skill").Wiki (per the
al_update_wikidiscipline; verified against installeddir(af))concepts/non_linear_search.md(families + decision table),api/searches.md(decision table),core/index.md(catalogue line). Now name what ships — Nautilus / Dynesty (static+dynamic), BFGS/LBFGS — with not-exposed notes matching thosesearches.mdalready carried in its body.api/searches.md"Shared knobs" listed two stale kwargs (iterations_per_update,force_pickle_overwrite); replaced with the verified shared set (iterations_per_quick/full_update,silence).concepts/samples_and_posteriors.mdnamed the removedSamplesMLE; optimizers now described via the realaf.Samples.sandbox.mdenv vars spot-checked against the stack: all real. Provenance stamping n/a (legacy-pinned pages).Validation
Symbol audit: 55 files, 110 symbols, 0 broken. Idiom lint: clean (181 files).
make validate-literature-citations: passes. Relative-link sweep over all edited files: clean.Note:
_style.mdis touched by both #36 and this PR on different lines; whichever merges second may need a trivial rebase.🤖 Generated with Claude Code